Análisis y predición de epitopes T y B en proteínas de Helicobacter pylori: Una aproximación inicial al diseño racional de estrategias terapeuticas alternativas sin uso de antibióticos
dc.contributor.author | Navarro-Quiroz, Elkin | |
dc.contributor.author | Navarro-Quiroz, Roberto | |
dc.contributor.author | España-Puccini, Pierine | |
dc.contributor.author | Ahmad, Mostapha | |
dc.contributor.author | Rios-Anillo, Margarita | |
dc.contributor.author | Olave-Jaller, Valeria | |
dc.contributor.author | Diaz, Anderson | |
dc.date.accessioned | 2018-03-05T15:16:13Z | |
dc.date.available | 2018-03-05T15:16:13Z | |
dc.date.issued | 2017-10 | |
dc.description.abstract | Helicobacter pylori (H. pylori) es un bacteria de forma espiral gram negativa que se estima afecta a más de la mitad de la población mundial, estableciendo una infección crónica en el estómago, debido a diversos mecanismos de evasión de la respuesta inmune. Este microorganismo se ha asociado con diversos trastornos gástricos que van desde gastritis hasta cáncer, por lo que es reconocido por la Organización Mundial de la Salud (OMS) como carcinógeno clase I. Regímenes de tratamiento convencionales involucran el uso de antibióticos, y estos fracasan cada vez más en el control de la infección, debido a que H. pylori ha adquirido de forma progresiva resistencia a los compuestos utilizados, lo cual sugiere la necesidad de desarrollar nuevas estrategias terapéuticas, lo cual implica la identificación de nuevos blancos terapéuticos. Este estudio tuvo como propósito la evaluación in silico de epitopes T y B en proteínas del Helicobacter pylori. Para ello fueron identificadas 22 proteínas de membrana externas de Helicobacter pylori Cepa 26695 con número de acceso NC_000915; en la selección se empleó la herramienta web Vaxign (disponible gratis en http://www.violinet.org/vaxign/), en las que se predijeron 100 epítopes (60 epítopes clases I y 40 epítopes clase II), que potencialmente podrían se utilizados en el desarrollo de nuevos abordajes terapéuticos de la infección por H. pylori sin uso de antibióticos. | spa |
dc.description.abstract | Helicobacter pylori (H. pylori) is a gram-negative spiral bacterium, estimated to affect more than half the world population, establishing chronic infection in the stomach, due to diverse mechanisms of immune response evasion. This microorganism has been associated with various gastric disorders ranging from gastritis to cancer, and is recognized by the World Health Organization (WHO) as a class I carcinogen. Conventional treatment regimes involve the use of antibiotics and these fail every time but in the control of the infection, because H. pylori has progressively acquired resistance to the compounds used, suggesting the need to develop new therapeutic strategies, which implies the identification of new therapeutic targets. The present study aimed at the in silico evaluation of T and B epitopes in Helicobacter pylori proteins. For this, 22 external membrane proteins of Helicobacter pylori Strain 26695 with accession number NC_000915 were identified, in the selection the web tool Vaxign (was available free at http://www.violinet.org/vaxign/), in which they were predicted 100 epitopes (60 class I epitopes and 40 class II epitopes), which could potentially be used in the development of new therapeutic approaches to H. pylori infection without the use of antibiotics. | eng |
dc.identifier.issn | 01205552 | |
dc.identifier.uri | http://hdl.handle.net/20.500.12442/1778 | |
dc.language.iso | spa | spa |
dc.publisher | Universidad del Norte | spa |
dc.rights.accessrights | info:eu-repo/semantics/openAccess | |
dc.rights.license | licencia de Creative Commons Reconocimiento-NoComercial-CompartirIgual 4.0 Internacional | spa |
dc.source | Revista Científica Salud Uninorte | spa |
dc.source | Vol. 33, No. 3 (2017) | spa |
dc.source.uri | http://rcientificas.uninorte.edu.co/index.php/salud/article/view/9275/10918 | |
dc.title | Análisis y predición de epitopes T y B en proteínas de Helicobacter pylori: Una aproximación inicial al diseño racional de estrategias terapeuticas alternativas sin uso de antibióticos | spa |
dc.title.alternative | Analysis and prediction of T and B epitopes in enHelicobacter pylori proteins: An initial approach to the rational design of alternative therapeutic strategies without the use of antibiotics | spa |
dc.type | article | spa |
dcterms.references | Naz A, Awan FM, Obaid A, Muhammad SA, Paracha RZ, Ahmad J et al. Identification of putative vaccine candidates against Helicobacter pylori exploiting exoproteome and secretome: a reverse vaccinology based approach. Infect Genet Evol. Jun 2015;32:280–91. Available: http://www.sciencedirect.com/ science/article/pii/S1567134815001124 | eng |
dcterms.references | Robin Warren J. Unidentified curved bacilli on gastric epithelium in active cronic gastritis. Lancet. Jun 1983];321(8336):1273–5. Available: http://www.thelancet.com/article/ S0140673683927198/fulltext | eng |
dcterms.references | Tomb J-F, White O, Kerlavage AR, Clayton RA, Sutton GG, Fleischmann RD, et al. The complete genome sequence of the gastric pathogen Helicobacter pylori. Aug 1997;388(6642):539-47. | eng |
dcterms.references | Spohn G, Scarlato V, Motility, Chemotaxis, and Flagella. Helicobacter pylori: Physiology and Genetics. ASM Press; 2001. Available: http:// www.ncbi.nlm.nih.gov/pubmed/21290725 | eng |
dcterms.references | Lambert JR, Lin SK, Aranda-Michel J. Helicobacter pylori. Scand J Gastroenterol Suppl. Jan 1995;208:33-46. Available: http://www.ncbi. nlm.nih.gov/pubmed/7777803 | eng |
dcterms.references | Bauerfeind P, Garner R, Dunn BE, Mobley HL. Synthesis and activity of Helicobacter pylori urease and catalase at low pH. Gut. Jan 1997;40(1):25–30. Available: http://www. ncbi.nlm.nih.gov/pubmed/9155571 | eng |
dcterms.references | Ha N-C, Oh S-T, Sung JY, Cha KA, Lee MH, Oh B-H. Supramolecular assembly and acid resistance of Helicobacter pylori urease. Nat Struct Biol. Jun 2001; 8(6):505–9. Available: http:// www.nature.com/doifinder/10.1038/88563 | eng |
dcterms.references | Torres J, Pérez-Pérez G, Goodman KJ, Atherton JC, Gold BD, Harris PR et al. A comprehensive review of the natural history of Helicobacter pylori infection in children. Arch Med Res. 2000;31(5):431–69. Available: http:// www.ncbi.nlm.nih.gov/pubmed/11179581 | eng |
dcterms.references | Frenck RW, Clemens J. Helicobacter in the developing world. Microbes Infect [Internet]. Jul 2003;5(8):705–13. Available: http://www. ncbi.nlm.nih.gov/pubmed/12814771 | eng |
dcterms.references | Dunn BE, Cohen H, Blaser MJ. Helicobacter pylori. Clin Microbiol Rev. Oct 1997 9];10(4):720– 41. Available: http://www.pubmedcentral. nih.gov/articlerender.fcgi?artid=172942&tool =pmcentrez&rendertype=abstract | eng |
dcterms.references | Mégraud F. The challenge of Helicobacter pylori resistance to antibiotics: the comeback of bismuth-based quadruple therapy. Therap Adv Gastroenterol. Mar 2012;5(2):103–9. Available: http://www.ncbi.nlm.nih.gov/pubmed/ 22423259 | eng |
dcterms.references | Fallone CA, Chiba N, van Zanten SV, Fischbach L, Gisbert JP, Hunt RH et al. The Toronto Consensus for the Treatment of Helicobacter pylori Infection in Adults. Gastroenterology. Jul 2016;151(1):51-69.e14. Available: http://www.ncbi.nlm.nih.gov/ pubmed/27102658 | eng |
dcterms.references | Ayraud S, Janvier B, Fauchère J-L. Experimental colonization of mice by fresh clinical isolates of Helicobacter pylori is not influenced by the cagA status and the vacA genotype. FEMS Immunol Med Microbiol. Nov 2002;34(3):169- 72. Available: http://www.ncbi.nlm.nih. gov/pubmed/12423767 | eng |
dcterms.references | Censini S, Lange C, Xiang Z, Crabtree JE, Ghiara P, Borodovsky M et al. cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors. Proc Natl Acad Sci U S A. Dec 1996;93(25):14648–53. Available: http:// www.pubmedcentral.nih.gov/articlerender. fcgi?artid=26189&tool=pmcentrez&renderty pe=abstract | eng |
dcterms.references | Crabtree JE, Taylor JD, Heatley RV, Shallcross TM, Rathbone BJ, Wyatt JI et al. Mucosal IgA recognition of Helicobacter pylori 120 kDa protein, peptic ulceration, and gastric pathology. Lancet. Aug 1991;338(8763):332–5. Available: http://www.sciencedirect.com/science/ article/pii/0140673691904777 | eng |
dcterms.references | Peek RM, Miller GG, Tham KT, Perez-Perez GI, Zhao X, Atherton JC et al. Heightened inflammatory response and cytokine expression in vivo to cagA+ Helicobacter pylori strains. Lab Invest. Dec 1995;73(6):760–70. Available: http://europepmc.org/abstract/ med/8558837 | eng |
dcterms.references | Atherton JC, Tham KT, Peek RM, Cover TL, Blaser MJ. Density of Helicobacter pylori Infection In Vivo as Assessed by Quantitative Culture and Histology. J Infect Dis. Sep 1996;174(3):552–6. Available: http://jid.oxfordjournals.org/cgi/content/ long/174/3/55Mohammadi M, Nedrud J, Redline R, Lycke N, Czinn SJ. Murine CD4 T-cell response to Helicobacter infection: TH1 cells enhance gastritis and TH2 cells reduce bacterial load. Gastroenterology. Dec 1997;113(6):1848–57. Available: http://www. ncbi.nlm.nih.gov/pubmed/9394724 | eng |
dcterms.references | Fox JG, Beck P, Dangler CA, Whary MT, Wang TC, Shi HN et al. Concurrent enteric helminth infection modulates inflammation and gastric immune responses and reduces helicobacter-induced gastric atrophy. Nat Med. May 2000;6(5):536–42. Available: http://www.ncbi.nlm.nih.gov/pubmed/ 10802709 | eng |
dcterms.references | 20. Moss SF, Moise L, Lee DS, Kim W, Zhang S, Lee J et al. HelicoVax: epitope-based therapeutic Helicobacter pylori vaccination in a mouse model. Vaccine. Mar 2011;29(11):2085– 91. Available: http://www.pubmedcentral. nih.gov/articlerender.fcgi?artid=3046230&t ool=pmcentrez&rendertype=abstract | eng |
dcterms.references | Rappuoli R. Reverse vaccinology. Curr Opin Microbiol. Oct 2000;3(5):445–50. Available: http://www.sciencedirect.com/science/article/ pii/S1369527400001193 | eng |
dcterms.references | Pizza M. Identification of Vaccine Candidates Against Serogroup B Meningococcus by Whole-Genome Sequencing. Science (80- ). March 2000;287(5459):1816–20. Available: http://www.sciencemag.org/content/ 287/5459/1816.abstract | eng |
dcterms.references | Larsen MV, Lundegaard C, Lamberth K, Buus S, Brunak S, Lund O et al. An integrative approach to CTL epitope prediction: a combined algorithm integrating MHC class I binding, TAP transport efficiency, and proteasomal cleavage predictions. Eur J Immunol. 2005;35(8):2295–303. Available: http:// www.ncbi.nlm.nih.gov/pubmed/15997466 | eng |
dcterms.references | Ovsyannikova IG, Dhiman N, Jacobson RM, Poland GA. Human leukocyte antigen polymorphisms: variable humoral immune responses to viral vaccines. Expert Rev Vaccines. Feb 2006;5(1):33–43. Available: http://www. ncbi.nlm.nih.gov/pubmed/16451106 | eng |
dcterms.references | Brusic V, Rudy G, Honeyman G, Hammer J, Harrison L. Prediction of MHC class IIbinding peptides using an evolutionary algorithm and artificial neural network. Bioinformatics. Jan 1998;14(2):121–30. Available: http://www.ncbi.nlm.nih.gov/pubmed/ 9545443 | eng |
dcterms.references | Buus S, Lauemøller SL, Worning P, Kesmir C, Frimurer T, Corbet S et al. Sensitive quantitative predictions of peptide-MHC binding by a “Query by Committee” artificial neural network approach. Tissue Antigens. 2003;62(5):378–84. | eng |
dcterms.references | Nielsen M, Lundegaard C, Worning P, Lauemøller SL, Lamberth K, Buus S et al. Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci. May 2003;12(5):1007–17. Available: http://www.pubmedcentral.nih. gov/articlerender.fcgi?artid=2323871&tool= pmcentrez&rendertype=abstract | eng |
dcterms.references | Nielsen M, Lundegaard C, Worning P, Sylvester Hvid C, Lamberth K, Buus S et al. Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach. Bioinformatics. 2004;20(9):1388–97. | eng |
dcterms.references | Shah NA, Barua P, Khan K. Immunoinformatics Aided Prediction of Cytotoxic T Cell Epitope of Respiratory Syncytial Virus. 2015;1(2):99–104. | eng |
dcterms.references | He Y, Xiang Z, Mobley HLT. Vaxign: The first web-based vaccine design program for reverse vaccinology and applications for vaccine development. J Biomed Biotechnol. 2010; 2010: 297505. doi: 10.1155 / 2010/297505 | eng |
dcterms.references | Xiang Z, He Y. Vaxign: a web-based vaccine target design program for reverse vaccinology. Procedia Vaccinol [Internet]. 2009;1(1):23–9. Available: http://www. sciencedirect.com/science/article/pii/ S1877282X09000368 | eng |
dcterms.references | Figueiredo C, Machado JC, Pharoah P, Seruca R, Sousa S, Carvalho R et al. Helicobacter pylori and interleukin 1 genotyping: an opportunity to identify high-risk individuals for gastric carcinoma. J Natl Cancer Inst. Nov 2002;94(22):1680–7. Available: http://www. ncbi.nlm.nih.gov/pubmed/12441323 | eng |
dcterms.references | Blaser MJ. The biology of cag in the Helicobacter pylori-human interaction. Gastroenterology. May 2005;128(5):1512–5. Available: http://www.ncbi.nlm.nih.gov/ pubmed/15887132 | eng |
dcterms.references | van Doorn LJ, Figueiredo C, Sanna R, Plaisier A, Schneeberger P, de Boer W et al. Clinical relevance of the cagA, vacA, and iceA status of Helicobacter pylori. Gastroenterology. Jul 1998;115(1):58–66. Available: http:// www.ncbi.nlm.nih.gov/pubmed/9649459 | eng |
dcterms.references | Nilsson C, Sillén A, Eriksson L, Strand M-L, Enroth H, Normark S et al. Correlation between cag pathogenicity island composition and Helicobacter pylori-associated gastroduodenal disease. Infect Immun. Nov 2003;71(11):6573–81. Available: http:// www.pubmedcentral.nih.gov/articlerender. fcgi?artid=219608&tool=pmcentrez&re ndertype=abstract | eng |
dcterms.references | Moise L, McMurry JA, Pappo J, Lee D-S, Moss SF, Martin WD et al. Identification of genome- derived vaccine candidates conserved between human and mouse-adapted strains of H. pylori. Hum Vaccin. 2008;4(3):219–23. Available: http://www.ncbi.nlm.nih.gov/ pubmed/18376134 | eng |
dcterms.references | Ardito M, Fueyo J, Tassone R, Terry F, Da- Silva K, Zhang S et al. An Integrated Genomic and Immunoinformatic Approach to H. pylori Vaccine Design. Immunome Res. Jan 2011;7(2):1. Available: http://www.researchgate.net/publication/51842751_An_Integrated_ Genomic_and_Immunoinformatic_ Approach_to_H._pylori_Vaccine_Design | eng |
dcterms.references | Pruitt KD, Tatusova T, Maglott DR. NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res. Jan 2005;33(Database issue):D501-4. Available: http://www.pubmedcentral.nih. gov/articlerender.fcgi?artid=539979&tool= pmcentrez&rendertype=abstract | eng |
dcterms.references | Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL. GenBank. Nucleic Acids Res. Jan 2006;34(Database issue):D16-20. Available: http://www.pubmedcentral.nih. gov/articlerender.fcgi?artid=1347519&tool =pmcentrez&rendertype=abstract | eng |
dcterms.references | Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R et al. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics. Jul 2010;26(13):1608–15. Available: http://www.pubmedcentral.nih.gov/articlerender. fcgi?artid=2887053&tool=pmcent rez&rendertype=abstract | eng |
dcterms.references | McGeoch DJ, Dalrymple MA, Davison AJ, Dolan A, Frame MC, McNab D et al. The complete DNA sequence of the long unique region in the genome of herpes simplex virus type 1. J Gen Virol. Jul 1988;69 ( Pt 7):1531–74. Available: http://www.ncbi. nlm.nih.gov/pubmed/2839594 | eng |
dcterms.references | Matthews BW. Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim Biophys Acta. Oct 1975;405(2):442–51. Available: http://www. ncbi.nlm.nih.gov/pubmed/1180967 | eng |
dcterms.references | Chen F, Mackey AJ, Stoeckert CJ, Roos DS. OrthoMCL-DB: querying a comprehensive multi-species collection of ortholog groups. Nucleic Acids Res. Jan 2006;34(Database issue):D363-8. Available: http://www.pubmedcentral. nih.gov/articlerender.fcgi?artid =1347485&tool=pmcentrez&rendertype=ab stract | eng |
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