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Detección, discriminación y cuantificación de pequeñas secuencias de nucleótidos por Espectroscopía Infrarroja por Transformada de Fourier (FTIR) en la identificación molecular del Virus Del Papiloma Humano

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datacite.rightshttp://purl.org/coar/access_right/c_16ecspa
dc.contributor.authorGuerra Simanca, Martha Isabel
dc.date.accessioned2021-02-19T19:21:50Z
dc.date.available2021-02-19T19:21:50Z
dc.date.issued2021
dc.description.abstractEn este trabajo investigativo se evaluó el uso de la técnica de espectroscopía infrarroja con transformada Fourier por reflexión total atenuada (ATR-FTIR) en la detección, discriminación y cuantificación de pequeñas secuencias de nucleótidos aplicado en la identificación molecular de genotipos de virus de papiloma humano (VPH). En una primera parte se demostró la viabilidad de la técnica ATR-FTIR en la diferenciación de pequeñas secuencias de ADN de una sola cadena, para esto se generó un modelo de regresión para la cuantificación del porcentaje de nucleótido (%N, para cada nucleótido %A, %C, %T y %G) por el método multivariado de mínimos cuadrados parciales (PLS) y se analizaron las señales espectrales por ATR-FTIR de estas secuencias. El error de los modelos para la cuantificación del %N estuvo entre 0.9-1.2%. En una segunda parte se implementó la técnica ATR-FTIR en la identificación de VPH. Para esto se generaron modelos multivariados por el método de análisis discriminante PLS (PLS-DA) para la predicción de los genotipos de VPH 16, 31, 35, 51 y 66. Esto se realizó a partir de espectros de los productos de amplificados de ADN por la técnica de reacción en cadena de la polimerasa en tiempo real (real-time PCR), los modelos fueron diseñados usando los espectros ATR-FTIR de los controles positivos y negativos de los productos de real-time PCR. Estos modelos fueron usados para predecir muestras clínicas de seis mujeres y los resultados fueron contrastados con la técnica convencional real-time PCR. Todas las muestras fueron predichas con el mismo genotipo de VPH validado por real-time PCR.spa
dc.description.abstractIn this research, the Fourier transform infrared spectroscopy by attenuated total reflection (ATR-FTIR) technique is used to detect, discriminate, and quantify small nucleotide sequences. This was applied in the molecular identification of genotypes of human papillomavirus (HPV). Initially, I demonstrated the viability of the ATR-FTIR technique in the differentiation of small single-stranded DNA sequences, for this, a model was generated to quantify the nucleotide percentage (% N, for each nucleotide % A, % C,% T, and % G) by the multivariate method of partial least squares (PLS) and the spectral signals of these sequences were analyzed by ATR-FTIR. The error of the models for the quantification of % N was between 0.9-1.2%. Finally, to identify HPV, I implemented the ATR-FTIR technique. For this, multivariate models were generated by the PLS discriminant analysis method (PLS-DA) in the prediction of HPV genotypes 16, 31, 35, 51 and 66. This was performed from spectra of DNA amplification products using the realtime polymerase chain reaction (real-time PCR) technique; the models were designed using the ATR-FTIR spectra of the positive and negative controls of the real-time PCR products. These models were used to predict clinical samples from six women, and the results were contrasted with the conventional real-time PCR technique. All samples were predicted with the same HPV serotype found by real-time PCR.eng
dc.format.mimetypepdfspa
dc.identifier.urihttps://hdl.handle.net/20.500.12442/7095
dc.language.isospaspa
dc.publisherEdiciones Universidad Simón Bolívarspa
dc.publisherFacultad de Ciencias Básicas y Biomédicasspa
dc.rightsAttribution-NonCommercial-NoDerivatives 4.0 Internacionaleng
dc.rights.accessrightsinfo:eu-repo/semantics/restrictedAccessspa
dc.rights.urihttp://creativecommons.org/licenses/by-nc-nd/4.0/
dc.subjectATR-FTIRspa
dc.subjectVPHspa
dc.subjectADNspa
dc.subjectNucleótidosspa
dc.subjectCáncer cervicouterinospa
dc.subjectPLSspa
dc.subjectPLS-DAspa
dc.subjectreal-time PCReng
dc.subjectHPVeng
dc.subjectDNAeng
dc.subjectNucleotideseng
dc.subjectCervical cancereng
dc.titleDetección, discriminación y cuantificación de pequeñas secuencias de nucleótidos por Espectroscopía Infrarroja por Transformada de Fourier (FTIR) en la identificación molecular del Virus Del Papiloma Humanospa
dc.type.driverinfo:eu-repo/semantics/masterThesisspa
dc.type.spaTrabajo de grado másterspa
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dcterms.referencesTafintsev D. Multivariate Classification Methods for Spectroscopic Data with Multiple Class Structure. Norwegian University of Life Sciences NMBU; 2016. https://nmbu.brage.unit.no/nmbuxmlui/bitstream/handle/11250/2449832/Tafintsev_2016.pdf?sequence=1&isAllowed=yeng
oaire.versioninfo:eu-repo/semantics/acceptedVersionspa
sb.programaMaestría en Genéticaspa
sb.sedeSede Barranquillaspa

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